Package: DQAstats 0.3.5

Lorenz A. Kapsner

DQAstats: Core Functions for Data Quality Assessment

Perform data quality assessment ('DQA') of electronic health records ('EHR'). Publication: Kapsner et al. (2021) <doi:10.1055/s-0041-1733847>.

Authors:Lorenz A. Kapsner [cre, aut], Jonathan M. Mang [aut], Helene Köster [ctb], MIRACUM - Medical Informatics in Research and Care in University Medicine [fnd], Universitätsklinikum Erlangen [cph]

DQAstats_0.3.5.tar.gz
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DQAstats.pdf |DQAstats.html✨
DQAstats/json (API)

# Install 'DQAstats' in R:

install.packages('DQAstats', repos = c('https://miracum.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/miracum/dqa-dqastats/issues

Uses libs:

openjdk– OpenJDK Java runtime, using Hotspot JIT

On CRAN:

data-quality

24 exports 7 stars 2.12 score 106 dependencies 1 dependents 4 scripts 669 downloads

Last updated 3 months agofrom:e53ad68ea2. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 04 2024
R-4.5-win	OK	Sep 04 2024
R-4.5-linux	OK	Sep 04 2024
R-4.4-win	OK	Sep 04 2024
R-4.4-mac	OK	Sep 04 2024
R-4.3-win	OK	Sep 04 2024
R-4.3-mac	OK	Sep 04 2024

Exports:atemp_plausi_results check_date_restriction_requirements completeness create_helper_vars create_markdown create_pdf_report data_loading descriptive_results difference_checks dqa etl_checks export_aggregated format_value_conformance_results generate_datamap get_atemp_plausis is_latex_installed parallel read_mdr reduce_cat test_csv time_compare uniq_plausi_results value_conformance value_conformance_checks

Dependencies:backports base64enc bit bit64 blob bslib cachem checkmate cleaR cli cluster codetools colorspace config cpp11 data.table DBI digest DIZtools DIZutils evaluate fansi farver fastmap fontawesome foreign Formula fs future future.apply generics ggplot2 globals glue GPArotation gridExtra gtable highr Hmisc hms htmlTable htmltools htmlwidgets isoband jquerylib jsonlite kableExtra knitr labeling later lattice lifecycle listenv logger lubridate magrittr MASS Matrix memoise mgcv mime mnormt munsell nlme nnet parallelly parsedate pillar pkgconfig plogr processx ps psych quarto R.methodsS3 R.oo R.utils R6 rappdirs RColorBrewer Rcpp rJava RJDBC RJSONIO rlang rmarkdown rpart RPostgres rstudioapi sass scales stringi stringr svglite systemfonts tibble timechange tinytex utf8 vctrs viridis viridisLite withr xfun xml2 yaml

DQAstats2SHIPdataset

Rendered fromDQAstats2SHIPdataset.qmdusingquarto::htmlon Sep 04 2024.

Last update: 2024-06-03
Started: 2024-06-03

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Time filtering of data.table or sql-strings.	apply_time_restriciton
atemp_plausi_results helper function	atemp_plausi_results
Checking the mdr integrity for time restrictions	check_date_restriction_requirements
completeness helper function	completeness
create_helper_vars helper function	create_helper_vars
create_markdown helper function	create_markdown
create_pdf_report helper function	create_pdf_report
data_loading helper function	data_loading
descriptive_results helper function	descriptive_results
difference_checks helper function	difference_checks
Perform Data Quality Assessment of Electronic Health Records.	dqa
etl_checks helper function	etl_checks
Export results to csv/zip file.	export_aggregated
format_value_conformance_results helper function	format_value_conformance_results
generate_datamap helper function	generate_datamap
get_atemp_plausis helper function	get_atemp_plausis
Get a formatted string containing start and end time of the date restriction applied to the data.	get_restricting_date_info
Checks if there is a LaTeX installation available	is_latex_installed
load_csv helper function	load_csv
load_database helper function	load_database
load_sqls helper function	load_sqls
parallel helper function	parallel
read_mdr helper function	read_mdr
reduce_cat helper function	reduce_cat
test_csv helper function	test_csv
time_compare helper function	time_compare
uniq_plausi_results helper function	uniq_plausi_results
value_conformance helper function	value_conformance
value_conformance_checks helper function	value_conformance_checks